Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACLV7D_RS03430 Genome accession   NZ_OZ217345
Coordinates   658401..659633 (+) Length   410 a.a.
NCBI ID   WP_173283499.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 653401..664633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS03400 (SMIF22_06590) - 653746..654423 (+) 678 WP_218764216.1 DnaD domain-containing protein -
  ACLV7D_RS03405 (SMIF22_06600) tpiA 654521..655279 (+) 759 WP_000087893.1 triose-phosphate isomerase -
  ACLV7D_RS03410 (SMIF22_06610) lytC 655317..656807 (+) 1491 WP_218764217.1 GH25 family lysozyme -
  ACLV7D_RS03415 (SMIF22_06620) - 657045..657563 (+) 519 WP_050107673.1 Dps family protein -
  ACLV7D_RS03420 (SMIF22_06630) - 657693..658199 (+) 507 WP_218764218.1 dihydrofolate reductase -
  ACLV7D_RS03425 (SMIF22_06640) - 658199..658369 (+) 171 WP_000442276.1 hypothetical protein -
  ACLV7D_RS03430 (SMIF22_06650) clpX 658401..659633 (+) 1233 WP_173283499.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACLV7D_RS03435 (SMIF22_06660) yihA 659642..660229 (+) 588 WP_000422580.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACLV7D_RS03440 (SMIF22_06670) - 660240..660620 (+) 381 WP_001140420.1 RidA family protein -
  ACLV7D_RS03445 (SMIF22_06680) rapZ 660672..661562 (+) 891 WP_000163062.1 RNase adapter RapZ -
  ACLV7D_RS03450 (SMIF22_06690) - 661559..662536 (+) 978 WP_050280515.1 YvcK family protein -
  ACLV7D_RS03455 (SMIF22_06700) whiA 662533..663444 (+) 912 WP_112445495.1 DNA-binding protein WhiA -
  ACLV7D_RS03460 (SMIF22_06710) - 663652..664227 (-) 576 WP_000593540.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45682.23 Da        Isoelectric Point: 4.4803

>NTDB_id=1170362 ACLV7D_RS03430 WP_173283499.1 658401..659633(+) (clpX) [Streptococcus mitis isolate S. mitis F22]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEGVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1170362 ACLV7D_RS03430 WP_173283499.1 658401..659633(+) (clpX) [Streptococcus mitis isolate S. mitis F22]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
CGCTGGCAACAATGCCTTTATTTGTAATGAATGCGTGGAGTTAGCTCAAGAAATTATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGG
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGGCCAACTGGTTCAGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCGATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTTAAACTCTTGCAGGCTGCTGACTTTAACATTGAGCGCGCAGAGCGTGGGATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGGGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAAGGAACAGTTGCTAGCGTACCACCTCAAGGTGGACGCAAACATCCGCAACAAGAAATGATTCAAGTAGATACC
AAGAATATCCTCTTCATTGTTGGTGGTGCCTTTGATGGTATTGAAGAAATTGTTAAACAACGTCTTGGAGAAAAAGTCAT
CGGATTTGGTCAAAATAACAAGGCGATTGATGAAAATAGCTCTTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGTTTGCCTGTCTTTGCAGCTCTTGAGCAATTGACGGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATATCAAACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGA
CGATGAGGCCCTTCAAGAGATTGCCAACAAGGCCATCGAACGGAAGACTGGGGCGCGTGGTCTTCGTTCGATTATTGAAG
AAACCATGTTGGACGTTATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment