Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACLV7A_RS01750 Genome accession   NZ_OZ217344
Coordinates   340211..341137 (+) Length   308 a.a.
NCBI ID   WP_042900321.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 335211..346137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS01735 (SMIE22_03330) amiC 336702..338198 (+) 1497 WP_000759899.1 ABC transporter permease Regulator
  ACLV7A_RS01740 (SMIE22_03340) amiD 338198..339124 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7A_RS01745 (SMIE22_03350) amiE 339133..340200 (+) 1068 WP_000159551.1 ABC transporter ATP-binding protein Regulator
  ACLV7A_RS01750 (SMIE22_03360) amiF 340211..341137 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7A_RS01755 (SMIE22_03370) - 341552..342430 (-) 879 WP_411863420.1 LysR family transcriptional regulator -
  ACLV7A_RS01760 (SMIE22_03380) - 342558..342908 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -
  ACLV7A_RS01765 (SMIE22_03390) - 343267..344892 (+) 1626 WP_411863421.1 malolactic enzyme -
  ACLV7A_RS01770 (SMIE22_03400) - 344969..345916 (+) 948 WP_411863422.1 AEC family transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34791.83 Da        Isoelectric Point: 6.5107

>NTDB_id=1170274 ACLV7A_RS01750 WP_042900321.1 340211..341137(+) (amiF) [Streptococcus mitis isolate S. mitis E22]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170274 ACLV7A_RS01750 WP_042900321.1 340211..341137(+) (amiF) [Streptococcus mitis isolate S. mitis E22]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACGTTCTCGCTTGTTGGTGAGTCAGGTAGTGGGAAAACAACGATTGGTCGTG
CGATAATCGGTCTAAATGATACAAGTAATGGTGATATTATTTTTGAGGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAAGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTGGGGCTTCTTGCTGAGCACTTGACTCGCTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTTTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTATAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTGGCGCGTTATCAACAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment