Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACLV7Z_RS03395 Genome accession   NZ_OZ217343
Coordinates   656459..657691 (+) Length   410 a.a.
NCBI ID   WP_218774246.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 651459..662691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS03365 (SMIG22_06490) - 651508..652185 (+) 678 WP_218774249.1 DnaD domain-containing protein -
  ACLV7Z_RS03370 (SMIG22_06500) tpiA 652283..653041 (+) 759 WP_000087893.1 triose-phosphate isomerase -
  ACLV7Z_RS03375 (SMIG22_06510) lytC 653079..654593 (+) 1515 WP_218774248.1 GH25 family lysozyme -
  ACLV7Z_RS03380 (SMIG22_06520) - 655103..655621 (+) 519 WP_000229861.1 Dps family protein -
  ACLV7Z_RS03385 (SMIG22_06530) - 655751..656257 (+) 507 WP_218774247.1 dihydrofolate reductase -
  ACLV7Z_RS03390 (SMIG22_06540) - 656257..656427 (+) 171 WP_000442276.1 hypothetical protein -
  ACLV7Z_RS03395 (SMIG22_06550) clpX 656459..657691 (+) 1233 WP_218774246.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACLV7Z_RS03400 (SMIG22_06560) yihA 657700..658287 (+) 588 WP_020900580.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACLV7Z_RS03405 (SMIG22_06570) - 658298..658678 (+) 381 WP_001140420.1 RidA family protein -
  ACLV7Z_RS03410 (SMIG22_06580) rapZ 658731..659621 (+) 891 WP_218774245.1 RNase adapter RapZ -
  ACLV7Z_RS03415 (SMIG22_06590) - 659618..660595 (+) 978 WP_218774244.1 YvcK family protein -
  ACLV7Z_RS03420 (SMIG22_06600) whiA 660592..661503 (+) 912 WP_049546606.1 DNA-binding protein WhiA -
  ACLV7Z_RS03425 - 661713..661871 (-) 159 WP_218757463.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45754.30 Da        Isoelectric Point: 4.4550

>NTDB_id=1170199 ACLV7Z_RS03395 WP_218774246.1 656459..657691(+) (clpX) [Streptococcus mitis isolate S. mitis G22]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1170199 ACLV7Z_RS03395 WP_218774246.1 656459..657691(+) (clpX) [Streptococcus mitis isolate S. mitis G22]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
CGCTGGCAACAATGCCTTTATTTGTAATGAATGCGTGGAGTTAGCTCAAGAAATTATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGCATCAATTTCCACGATACGCGAGAAGAGTCAGAAGA
TGTGGATTTGCAGAAATCAAACATCTTGATGATTGGTCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTTAAACTCTTGCAGGCTGCTGACTTTAACATTGAACGTGCAGAGCGTGGCATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAAAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCTCTTCTCAAGA
TTATAGAGGGAACAATTGCAAGCGTACCGCCTCAAGGTGGACGCAAACATCCGCAACAAGAGATGATTCAAGTGGATACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATTGAAGAAATTGTCAAACAACGTCTGGGAGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAAGCGATTGATGAAAATAGCTCTTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGTTTGCCTGTCTTTGCAGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGT
ATCTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGTTATCTTATGACGACGTTGAGTTGGAATTTGA
TGACGAAGCCCTTCAAGAAATCGCCAATAAGGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCAATTATCGAAG
AGACCATGTTGGATGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATTACAAAAGAAGCTGTCGAT
GGAACGGACAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment