Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACLV7H_RS03110 Genome accession   NZ_OZ217340
Coordinates   573763..574995 (+) Length   410 a.a.
NCBI ID   WP_411866327.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 568763..579995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS03080 (SORA22_06110) galE 569433..570452 (+) 1020 WP_411866325.1 UDP-glucose 4-epimerase GalE -
  ACLV7H_RS03085 (SORA22_06120) - 570454..571420 (+) 967 Protein_554 glycosyltransferase family 2 protein -
  ACLV7H_RS03090 - 571497..571700 (-) 204 WP_002874767.1 ferredoxin -
  ACLV7H_RS03095 (SORA22_06130) - 571746..572252 (+) 507 WP_045592377.1 SAG1386/EF1546 family surface-associated protein -
  ACLV7H_RS03100 (SORA22_06140) cmk 572262..572936 (+) 675 WP_000849406.1 (d)CMP kinase -
  ACLV7H_RS03105 (SORA22_06150) - 573055..573561 (+) 507 WP_411866326.1 dihydrofolate reductase -
  ACLV7H_RS03110 (SORA22_06170) clpX 573763..574995 (+) 1233 WP_411866327.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACLV7H_RS03115 (SORA22_06180) yihA 575004..575591 (+) 588 WP_411866328.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACLV7H_RS03120 (SORA22_06190) - 575601..575981 (+) 381 WP_411866329.1 RidA family protein -
  ACLV7H_RS03125 (SORA22_06200) rapZ 576033..576923 (+) 891 WP_061586683.1 RNase adapter RapZ -
  ACLV7H_RS03130 (SORA22_06210) - 576920..577897 (+) 978 WP_411866330.1 YvcK family protein -
  ACLV7H_RS03135 (SORA22_06220) whiA 577894..578805 (+) 912 WP_411866331.1 DNA-binding protein WhiA -
  ACLV7H_RS03140 (SORA22_06230) - 578836..579804 (-) 969 WP_411866332.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45631.22 Da        Isoelectric Point: 4.4581

>NTDB_id=1169951 ACLV7H_RS03110 WP_411866327.1 573763..574995(+) (clpX) [Streptococcus oralis isolate S. oralis A22]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAESGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDEKSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1169951 ACLV7H_RS03110 WP_411866327.1 573763..574995(+) (clpX) [Streptococcus oralis isolate S. oralis A22]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAATTGGCTCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TTTTAGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCTTAAACCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAACCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGTCCAACTGGTTCTGGGAAAACTTTCTTGGCCCAAACCTTGGCTA
AGAGCTTGAACGTGCCTTTTGCTATCGCAGATGCGACAGCTCTGACTGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAC
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAGAGTGGAATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTTTCTGGTGAAGGAGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCACCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAGGTAGATACC
AAGAACATCCTCTTCATCGTGGGTGGTGCTTTTGATGGCATCGAAGAAATTGTTAAACAACGTCTGGGTGAAAAAGTCAT
CGGTTTCGGCCAAAATAACAAGGCGATTGACGAAAAAAGCTCCTACATGCAAGAAATCATCGCGGAAGATATTCAAAAAT
TCGGTATTATTCCTGAGTTGATTGGACGTTTGCCAGTCTTTGCAGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGATGAAGCTCTTCAGGAAATCGCCAATAAAGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCGATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTACCAAGTCAAGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment