Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACH8EK_RS03795 Genome accession   NZ_OZ197910
Coordinates   715834..716499 (+) Length   221 a.a.
NCBI ID   WP_047926672.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-24-001     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 710834..721499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EK_RS03770 cysT 710970..711797 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  ACH8EK_RS03775 - 711978..712310 (+) 333 WP_003687908.1 hypothetical protein -
  ACH8EK_RS03780 - 712637..713146 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ACH8EK_RS03785 - 713376..713957 (-) 582 WP_003698180.1 superoxide dismutase -
  ACH8EK_RS03790 dnaB 714120..715526 (+) 1407 WP_047926755.1 replicative DNA helicase -
  ACH8EK_RS03795 pilH 715834..716499 (+) 666 WP_047926672.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACH8EK_RS03800 pilI 716531..717139 (+) 609 WP_169577276.1 type IV pilus modification protein PilV Machinery gene
  ACH8EK_RS03805 pilJ 717136..718071 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  ACH8EK_RS03810 pilK 718050..718661 (+) 612 WP_395373033.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACH8EK_RS03815 pilL 718663..719136 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  ACH8EK_RS03820 - 719206..719514 (-) 309 WP_010359926.1 AzlD family protein -
  ACH8EK_RS03825 - 719511..720221 (-) 711 Protein_747 AzlC family ABC transporter permease -
  ACH8EK_RS03830 dut 720387..720839 (+) 453 WP_010359930.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24701.22 Da        Isoelectric Point: 9.3981

>NTDB_id=1169712 ACH8EK_RS03795 WP_047926672.1 715834..716499(+) (pilH) [Neisseria gonorrhoeae isolate SGC-24-001]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVN
NQCDFGKKGQGMLAFGDKNDNKAYDGDTKDVFLRNVVLNDDINDKRINYTFNHIAFGQIQPTAERVVWTFNQNGTFGYLP
DQNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1169712 ACH8EK_RS03795 WP_047926672.1 715834..716499(+) (pilH) [Neisseria gonorrhoeae isolate SGC-24-001]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCAAC
AACCAGTGCGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAATACAGCCGACTGCCGAACGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCC
GATCAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

91.855

100

0.919

Multiple sequence alignment