Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   ACH8EK_RS03805 Genome accession   NZ_OZ197910
Coordinates   717136..718071 (+) Length   311 a.a.
NCBI ID   WP_010357463.1    Uniprot ID   A0AB74EBP0
Organism   Neisseria gonorrhoeae isolate SGC-24-001     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712136..723071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EK_RS03780 - 712637..713146 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ACH8EK_RS03785 - 713376..713957 (-) 582 WP_003698180.1 superoxide dismutase -
  ACH8EK_RS03790 dnaB 714120..715526 (+) 1407 WP_047926755.1 replicative DNA helicase -
  ACH8EK_RS03795 pilH 715834..716499 (+) 666 WP_047926672.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACH8EK_RS03800 pilI 716531..717139 (+) 609 WP_169577276.1 type IV pilus modification protein PilV Machinery gene
  ACH8EK_RS03805 pilJ 717136..718071 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  ACH8EK_RS03810 pilK 718050..718661 (+) 612 WP_395373033.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACH8EK_RS03815 pilL 718663..719136 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  ACH8EK_RS03820 - 719206..719514 (-) 309 WP_010359926.1 AzlD family protein -
  ACH8EK_RS03825 - 719511..720221 (-) 711 Protein_747 AzlC family ABC transporter permease -
  ACH8EK_RS03830 dut 720387..720839 (+) 453 WP_010359930.1 dUTP diphosphatase -
  ACH8EK_RS03835 dapC 720917..722104 (+) 1188 WP_235270334.1 succinyldiaminopimelate transaminase -
  ACH8EK_RS03840 yaaA 722260..723039 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34216.91 Da        Isoelectric Point: 8.9718

>NTDB_id=1169714 ACH8EK_RS03805 WP_010357463.1 717136..718071(+) (pilJ) [Neisseria gonorrhoeae isolate SGC-24-001]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAISK
PGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRYIY
VSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1169714 ACH8EK_RS03805 WP_010357463.1 717136..718071(+) (pilJ) [Neisseria gonorrhoeae isolate SGC-24-001]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATATCGAAA
CCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCAATAATGAGGAAGGTTTGTTCCGCTTCC
AATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTATATCTAT
GTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTCTGTTAC
GCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTTATGCTT
ACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

89.49

100

0.904

Multiple sequence alignment