Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACH8EK_RS02875 Genome accession   NZ_OZ197910
Coordinates   548503..549306 (-) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae isolate SGC-24-001     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 543503..554306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EK_RS02865 - 545907..546182 (-) 276 WP_153707850.1 hypothetical protein -
  ACH8EK_RS02870 comA 546214..548433 (+) 2220 WP_154240895.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACH8EK_RS02875 comL 548503..549306 (-) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  ACH8EK_RS02880 rluD 549305..550429 (+) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACH8EK_RS02885 - 550582..551529 (-) 948 Protein_564 bile acid:sodium symporter family protein -
  ACH8EK_RS02890 - 551606..551830 (-) 225 WP_225577482.1 hypothetical protein -
  ACH8EK_RS02895 pgeF 551982..552761 (+) 780 WP_003687651.1 peptidoglycan editing factor PgeF -
  ACH8EK_RS02900 lptE 552813..553292 (+) 480 WP_003687653.1 LPS assembly lipoprotein LptE -
  ACH8EK_RS02905 holA 553294..554292 (+) 999 WP_003687654.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=1169708 ACH8EK_RS02875 WP_003687645.1 548503..549306(-) (comL) [Neisseria gonorrhoeae isolate SGC-24-001]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1169708 ACH8EK_RS02875 WP_003687645.1 548503..549306(-) (comL) [Neisseria gonorrhoeae isolate SGC-24-001]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTATTTAACGAAGACCAGTCCTTCCTGAACAAACTGGCATCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment