Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUD0_RS10635 Genome accession   NZ_OZ197102
Coordinates   2090203..2090889 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01975-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2085203..2095889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD0_RS10600 yqeH 2085730..2086830 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUD0_RS10605 aroE 2086844..2087650 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUD0_RS10610 yhbY 2087654..2087944 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUD0_RS10615 nadD 2087947..2088516 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUD0_RS10620 yqeK 2088506..2089090 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUD0_RS10625 rsfS 2089091..2089444 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUD0_RS10630 - 2089447..2090163 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUD0_RS10635 comEA 2090203..2090889 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUD0_RS10640 - 2090981..2091442 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUD0_RS10645 comEC 2091447..2093648 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUD0_RS10650 holA 2093705..2094679 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUD0_RS10655 rpsT 2094724..2094975 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169674 ACNUD0_RS10635 WP_001825349.1 2090203..2090889(+) (comEA) [Staphylococcus aureus isolate 23S01975-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169674 ACNUD0_RS10635 WP_001825349.1 2090203..2090889(+) (comEA) [Staphylococcus aureus isolate 23S01975-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment