Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUD0_RS07605 Genome accession   NZ_OZ197102
Coordinates   1491680..1492249 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01975-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486680..1497249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD0_RS07580 cysE 1487893..1488540 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNUD0_RS07585 cysS 1488524..1489924 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUD0_RS07590 - 1489917..1490321 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUD0_RS07595 rlmB 1490329..1491075 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUD0_RS07600 - 1491075..1491599 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUD0_RS07605 sigH 1491680..1492249 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUD0_RS07610 rpmG 1492364..1492507 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUD0_RS07615 secE 1492563..1492745 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUD0_RS07620 nusG 1492758..1493306 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUD0_RS07625 rplK 1493487..1493909 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUD0_RS07630 rplA 1494117..1494809 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUD0_RS07635 rplJ 1495081..1495581 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUD0_RS07640 rplL 1495624..1495992 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUD0_RS07645 - 1496167..1496775 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169664 ACNUD0_RS07605 WP_000872866.1 1491680..1492249(+) (sigH) [Staphylococcus aureus isolate 23S01975-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169664 ACNUD0_RS07605 WP_000872866.1 1491680..1492249(+) (sigH) [Staphylococcus aureus isolate 23S01975-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment