Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUD0_RS01350 Genome accession   NZ_OZ197102
Coordinates   233049..233444 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01975-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 228049..238444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD0_RS01325 thiE 228648..229289 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUD0_RS01330 thiM 229291..230082 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUD0_RS01335 thiD 230066..230896 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUD0_RS01340 tenA 230889..231578 (-) 690 WP_000396068.1 thiaminase II -
  ACNUD0_RS01345 sceD 231965..232660 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUD0_RS01350 ssb 233049..233444 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUD0_RS01355 - 233638..234078 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUD0_RS01360 fabZ 234137..234577 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUD0_RS01365 murA 234611..235876 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUD0_RS01370 - 235987..236220 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUD0_RS01375 - 236352..236444 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUD0_RS01380 - 236874..237278 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169652 ACNUD0_RS01350 WP_000932694.1 233049..233444(-) (ssb) [Staphylococcus aureus isolate 23S01975-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169652 ACNUD0_RS01350 WP_000932694.1 233049..233444(-) (ssb) [Staphylococcus aureus isolate 23S01975-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment