Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUD5_RS14290 Genome accession   NZ_OZ197101
Coordinates   2820247..2820642 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01948-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2815247..2825642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD5_RS14260 - 2816413..2816817 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUD5_RS14265 - 2817247..2817339 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUD5_RS14270 - 2817471..2817704 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUD5_RS14275 murA 2817815..2819080 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUD5_RS14280 fabZ 2819114..2819554 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUD5_RS14285 - 2819613..2820053 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUD5_RS14290 ssb 2820247..2820642 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUD5_RS14295 sceD 2821031..2821726 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUD5_RS14300 tenA 2822113..2822802 (+) 690 WP_000396068.1 thiaminase II -
  ACNUD5_RS14305 thiD 2822795..2823625 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUD5_RS14310 thiM 2823609..2824400 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUD5_RS14315 thiE 2824402..2825043 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169646 ACNUD5_RS14290 WP_000932694.1 2820247..2820642(+) (ssb) [Staphylococcus aureus isolate 23S01948-3]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169646 ACNUD5_RS14290 WP_000932694.1 2820247..2820642(+) (ssb) [Staphylococcus aureus isolate 23S01948-3]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment