Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUD5_RS08035 Genome accession   NZ_OZ197101
Coordinates   1561463..1562032 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01948-3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556463..1567032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD5_RS07995 - 1556937..1557545 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUD5_RS08000 rplL 1557720..1558088 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUD5_RS08005 rplJ 1558131..1558631 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUD5_RS08010 rplA 1558903..1559595 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUD5_RS08015 rplK 1559803..1560225 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUD5_RS08020 nusG 1560406..1560954 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUD5_RS08025 secE 1560967..1561149 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUD5_RS08030 rpmG 1561205..1561348 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUD5_RS08035 sigH 1561463..1562032 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUD5_RS08040 - 1562113..1562637 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUD5_RS08045 rlmB 1562637..1563383 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUD5_RS08050 - 1563391..1563795 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUD5_RS08055 cysS 1563788..1565188 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUD5_RS08060 cysE 1565172..1565819 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169634 ACNUD5_RS08035 WP_000872866.1 1561463..1562032(-) (sigH) [Staphylococcus aureus isolate 23S01948-3]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169634 ACNUD5_RS08035 WP_000872866.1 1561463..1562032(-) (sigH) [Staphylococcus aureus isolate 23S01948-3]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment