Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUD5_RS05005 Genome accession   NZ_OZ197101
Coordinates   962813..963499 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01948-3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 957813..968499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD5_RS04985 rpsT 958727..958978 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACNUD5_RS04990 holA 959023..959997 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUD5_RS04995 comEC 960054..962255 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUD5_RS05000 - 962260..962721 (-) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUD5_RS05005 comEA 962813..963499 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUD5_RS05010 - 963539..964255 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUD5_RS05015 rsfS 964258..964611 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNUD5_RS05020 yqeK 964612..965196 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUD5_RS05025 nadD 965186..965755 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUD5_RS05030 yhbY 965758..966048 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUD5_RS05035 aroE 966052..966858 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUD5_RS05040 yqeH 966872..967972 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169624 ACNUD5_RS05005 WP_001825349.1 962813..963499(-) (comEA) [Staphylococcus aureus isolate 23S01948-3]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169624 ACNUD5_RS05005 WP_001825349.1 962813..963499(-) (comEA) [Staphylococcus aureus isolate 23S01948-3]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment