Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUDU_RS14520 Genome accession   NZ_OZ197099
Coordinates   2871802..2872371 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866802..2877371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS14480 - 2867276..2867884 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUDU_RS14485 rplL 2868059..2868427 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUDU_RS14490 rplJ 2868470..2868970 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUDU_RS14495 rplA 2869242..2869934 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUDU_RS14500 rplK 2870142..2870564 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUDU_RS14505 nusG 2870745..2871293 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUDU_RS14510 secE 2871306..2871488 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUDU_RS14515 rpmG 2871544..2871687 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUDU_RS14520 sigH 2871802..2872371 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUDU_RS14525 - 2872452..2872976 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUDU_RS14530 rlmB 2872976..2873722 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUDU_RS14535 - 2873730..2874134 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUDU_RS14540 cysS 2874127..2875527 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUDU_RS14545 cysE 2875511..2876158 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169580 ACNUDU_RS14520 WP_000872866.1 2871802..2872371(-) (sigH) [Staphylococcus aureus isolate 23S00079-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169580 ACNUDU_RS14520 WP_000872866.1 2871802..2872371(-) (sigH) [Staphylococcus aureus isolate 23S00079-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment