Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACNUDU_RS10815 Genome accession   NZ_OZ197099
Coordinates   2148875..2149747 (-) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2143875..2154747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS10805 trmFO 2145163..2146470 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACNUDU_RS10810 topA 2146626..2148701 (-) 2076 WP_001807811.1 type I DNA topoisomerase -
  ACNUDU_RS10815 dprA 2148875..2149747 (-) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  ACNUDU_RS10820 fmhC 2149920..2151164 (-) 1245 Protein_2101 FemA/FemB family glycyltransferase FmhC -
  ACNUDU_RS10825 - 2151192..2151344 (-) 153 Protein_2102 cell wall hydrolase -
  ACNUDU_RS10830 - 2151334..2151402 (-) 69 WP_374731670.1 YSIRK-type signal peptide-containing protein -
  ACNUDU_RS10835 sucD 2151629..2152537 (-) 909 WP_031775869.1 succinate--CoA ligase subunit alpha -
  ACNUDU_RS10840 sucC 2152559..2153725 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  ACNUDU_RS10845 - 2153834..2154601 (-) 768 WP_000176395.1 ribonuclease HII -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=1169570 ACNUDU_RS10815 WP_000620182.1 2148875..2149747(-) (dprA) [Staphylococcus aureus isolate 23S00079-1]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1169570 ACNUDU_RS10815 WP_000620182.1 2148875..2149747(-) (dprA) [Staphylococcus aureus isolate 23S00079-1]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment