Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUDU_RS08700 Genome accession   NZ_OZ197099
Coordinates   1709832..1710518 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704832..1715518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS08665 yqeH 1705359..1706459 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUDU_RS08670 aroE 1706473..1707279 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUDU_RS08675 yhbY 1707283..1707573 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUDU_RS08680 nadD 1707576..1708145 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUDU_RS08685 yqeK 1708135..1708719 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUDU_RS08690 rsfS 1708720..1709073 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUDU_RS08695 - 1709076..1709792 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUDU_RS08700 comEA 1709832..1710518 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUDU_RS08705 - 1710610..1711071 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUDU_RS08710 comEC 1711076..1713277 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUDU_RS08715 holA 1713334..1714308 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUDU_RS08720 rpsT 1714353..1714604 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169562 ACNUDU_RS08700 WP_001825349.1 1709832..1710518(+) (comEA) [Staphylococcus aureus isolate 23S00079-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169562 ACNUDU_RS08700 WP_001825349.1 1709832..1710518(+) (comEA) [Staphylococcus aureus isolate 23S00079-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment