Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUDU_RS05970 Genome accession   NZ_OZ197099
Coordinates   1204023..1204418 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1199023..1209418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS05940 - 1200189..1200593 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUDU_RS05945 - 1201023..1201115 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUDU_RS05950 - 1201247..1201480 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUDU_RS05955 murA 1201591..1202856 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUDU_RS05960 fabZ 1202890..1203330 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUDU_RS05965 - 1203389..1203829 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUDU_RS05970 ssb 1204023..1204418 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUDU_RS05975 sceD 1204807..1205502 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUDU_RS05980 tenA 1205889..1206578 (+) 690 WP_000396068.1 thiaminase II -
  ACNUDU_RS05985 thiD 1206571..1207401 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUDU_RS05990 thiM 1207385..1208176 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUDU_RS05995 thiE 1208178..1208819 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169551 ACNUDU_RS05970 WP_000932694.1 1204023..1204418(+) (ssb) [Staphylococcus aureus isolate 23S00079-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169551 ACNUDU_RS05970 WP_000932694.1 1204023..1204418(+) (ssb) [Staphylococcus aureus isolate 23S00079-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment