Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUD2_RS10030 Genome accession   NZ_OZ197097
Coordinates   1930732..1931127 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01471-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1925732..1936127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD2_RS10005 thiE 1926331..1926972 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUD2_RS10010 thiM 1926974..1927765 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUD2_RS10015 thiD 1927749..1928579 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUD2_RS10020 tenA 1928572..1929261 (-) 690 WP_000396068.1 thiaminase II -
  ACNUD2_RS10025 sceD 1929648..1930343 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUD2_RS10030 ssb 1930732..1931127 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUD2_RS10035 - 1931321..1931761 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUD2_RS10040 fabZ 1931820..1932260 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUD2_RS10045 murA 1932294..1933559 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUD2_RS10050 - 1933670..1933903 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUD2_RS10055 - 1934035..1934127 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUD2_RS10060 - 1934557..1934961 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169533 ACNUD2_RS10030 WP_000932694.1 1930732..1931127(-) (ssb) [Staphylococcus aureus isolate 23S01471-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169533 ACNUD2_RS10030 WP_000932694.1 1930732..1931127(-) (ssb) [Staphylococcus aureus isolate 23S01471-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment