Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUD2_RS04515 Genome accession   NZ_OZ197097
Coordinates   860115..860801 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01471-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 855115..865801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD2_RS04480 yqeH 855642..856742 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUD2_RS04485 aroE 856756..857562 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUD2_RS04490 yhbY 857566..857856 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUD2_RS04495 nadD 857859..858428 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUD2_RS04500 yqeK 858418..859002 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUD2_RS04505 rsfS 859003..859356 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUD2_RS04510 - 859359..860075 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUD2_RS04515 comEA 860115..860801 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUD2_RS04520 - 860893..861354 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUD2_RS04525 comEC 861359..863560 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUD2_RS04530 holA 863617..864591 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUD2_RS04535 rpsT 864636..864887 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169513 ACNUD2_RS04515 WP_001825349.1 860115..860801(+) (comEA) [Staphylococcus aureus isolate 23S01471-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169513 ACNUD2_RS04515 WP_001825349.1 860115..860801(+) (comEA) [Staphylococcus aureus isolate 23S01471-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment