Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUD2_RS01490 Genome accession   NZ_OZ197097
Coordinates   261595..262164 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01471-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 256595..267164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD2_RS01465 cysE 257808..258455 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNUD2_RS01470 cysS 258439..259839 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUD2_RS01475 - 259832..260236 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUD2_RS01480 rlmB 260244..260990 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUD2_RS01485 - 260990..261514 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUD2_RS01490 sigH 261595..262164 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUD2_RS01495 rpmG 262279..262422 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUD2_RS01500 secE 262478..262660 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUD2_RS01505 nusG 262673..263221 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUD2_RS01510 rplK 263402..263824 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUD2_RS01515 rplA 264032..264724 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUD2_RS01520 rplJ 264996..265496 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUD2_RS01525 rplL 265539..265907 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUD2_RS01530 - 266082..266690 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169503 ACNUD2_RS01490 WP_000872866.1 261595..262164(+) (sigH) [Staphylococcus aureus isolate 23S01471-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169503 ACNUD2_RS01490 WP_000872866.1 261595..262164(+) (sigH) [Staphylococcus aureus isolate 23S01471-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment