Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACNUEH_RS02145 Genome accession   NZ_OZ197095
Coordinates   440337..440759 (-) Length   140 a.a.
NCBI ID   WP_057065929.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435337..445759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS02115 - 435865..436899 (+) 1035 WP_032008730.1 lipase secretion chaperone -
  ACNUEH_RS02120 - 437014..437955 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  ACNUEH_RS02125 rplS 438008..438376 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ACNUEH_RS02130 trmD 438584..439324 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACNUEH_RS02135 rimM 439370..439918 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  ACNUEH_RS02140 rpsP 439938..440189 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACNUEH_RS02145 comF 440337..440759 (-) 423 WP_057065929.1 type IV pilin protein Machinery gene
  ACNUEH_RS02150 - 440759..441322 (-) 564 WP_024436448.1 type IV pilin protein -
  ACNUEH_RS02155 - 441332..445438 (-) 4107 WP_416632293.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15547.68 Da        Isoelectric Point: 9.2459

>NTDB_id=1169427 ACNUEH_RS02145 WP_057065929.1 440337..440759(-) (comF) [Acinetobacter baumannii isolate 23S01404-6]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWMLTATPKTNTIQAGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1169427 ACNUEH_RS02145 WP_057065929.1 440337..440759(-) (comF) [Acinetobacter baumannii isolate 23S01404-6]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGATGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.167

100

0.557
  pilE Acinetobacter baumannii D1279779

52.941

97.143

0.514
  pilA2 Legionella pneumophila str. Paris

38.235

97.143

0.371
  pilA2 Legionella pneumophila strain ERS1305867

38.235

97.143

0.371

Multiple sequence alignment