Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACNUEH_RS01800 Genome accession   NZ_OZ197095
Coordinates   369059..369694 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364059..374694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS01785 adeT2 365119..366105 (-) 987 WP_416632285.1 putative multidrug efflux protein AdeT2 -
  ACNUEH_RS01790 - 366185..367000 (-) 816 WP_000547772.1 NAD-dependent epimerase/dehydratase family protein -
  ACNUEH_RS01795 recG 367021..369066 (+) 2046 WP_016686247.1 ATP-dependent DNA helicase RecG -
  ACNUEH_RS01800 comF 369059..369694 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  ACNUEH_RS01805 - 369697..370098 (-) 402 WP_000849704.1 NUDIX hydrolase -
  ACNUEH_RS01810 - 370113..370694 (-) 582 WP_031966425.1 TIGR00730 family Rossman fold protein -
  ACNUEH_RS01815 - 370852..371865 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ACNUEH_RS01820 - 371935..372222 (-) 288 WP_000250997.1 STAS domain-containing protein -
  ACNUEH_RS01825 - 372234..372875 (-) 642 WP_416632286.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACNUEH_RS01830 - 372902..373582 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACNUEH_RS01835 mlaE 373582..374358 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=1169426 ACNUEH_RS01800 WP_000472273.1 369059..369694(+) (comF) [Acinetobacter baumannii isolate 23S01404-6]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1169426 ACNUEH_RS01800 WP_000472273.1 369059..369694(+) (comF) [Acinetobacter baumannii isolate 23S01404-6]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGTTAAAACAGCTAGGATGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991

Multiple sequence alignment