Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUD1_RS14480 Genome accession   NZ_OZ197094
Coordinates   2860479..2860874 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00076-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2855479..2865874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD1_RS14450 - 2856645..2857049 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUD1_RS14455 - 2857479..2857571 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUD1_RS14460 - 2857703..2857936 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUD1_RS14465 murA 2858047..2859312 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUD1_RS14470 fabZ 2859346..2859786 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUD1_RS14475 - 2859845..2860285 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUD1_RS14480 ssb 2860479..2860874 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUD1_RS14485 sceD 2861263..2861958 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUD1_RS14490 tenA 2862345..2863034 (+) 690 WP_000396068.1 thiaminase II -
  ACNUD1_RS14495 thiD 2863027..2863857 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUD1_RS14500 thiM 2863841..2864632 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUD1_RS14505 thiE 2864634..2865275 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169420 ACNUD1_RS14480 WP_000932694.1 2860479..2860874(+) (ssb) [Staphylococcus aureus isolate 23S00076-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169420 ACNUD1_RS14480 WP_000932694.1 2860479..2860874(+) (ssb) [Staphylococcus aureus isolate 23S00076-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment