Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUD1_RS08150 Genome accession   NZ_OZ197094
Coordinates   1586236..1586805 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00076-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581236..1591805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD1_RS08110 - 1581710..1582318 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUD1_RS08115 rplL 1582493..1582861 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUD1_RS08120 rplJ 1582904..1583404 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUD1_RS08125 rplA 1583676..1584368 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUD1_RS08130 rplK 1584576..1584998 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUD1_RS08135 nusG 1585179..1585727 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUD1_RS08140 secE 1585740..1585922 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUD1_RS08145 rpmG 1585978..1586121 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUD1_RS08150 sigH 1586236..1586805 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUD1_RS08155 - 1586886..1587410 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUD1_RS08160 rlmB 1587410..1588156 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUD1_RS08165 - 1588164..1588568 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUD1_RS08170 cysS 1588561..1589961 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUD1_RS08175 cysE 1589945..1590592 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169408 ACNUD1_RS08150 WP_000872866.1 1586236..1586805(-) (sigH) [Staphylococcus aureus isolate 23S00076-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169408 ACNUD1_RS08150 WP_000872866.1 1586236..1586805(-) (sigH) [Staphylococcus aureus isolate 23S00076-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment