Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUEA_RS13680 Genome accession   NZ_OZ197093
Coordinates   2722978..2723373 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01465-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2717978..2728373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEA_RS13650 - 2719144..2719548 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUEA_RS13655 - 2719978..2720070 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUEA_RS13660 - 2720202..2720435 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUEA_RS13665 murA 2720546..2721811 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUEA_RS13670 fabZ 2721845..2722285 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUEA_RS13675 - 2722344..2722784 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUEA_RS13680 ssb 2722978..2723373 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUEA_RS13685 sceD 2723762..2724457 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUEA_RS13690 tenA 2724844..2725533 (+) 690 WP_000396068.1 thiaminase II -
  ACNUEA_RS13695 thiD 2725526..2726356 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUEA_RS13700 thiM 2726340..2727131 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUEA_RS13705 thiE 2727133..2727774 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169377 ACNUEA_RS13680 WP_000932694.1 2722978..2723373(+) (ssb) [Staphylococcus aureus isolate 23S01465-3]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169377 ACNUEA_RS13680 WP_000932694.1 2722978..2723373(+) (ssb) [Staphylococcus aureus isolate 23S01465-3]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment