Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUEA_RS07420 Genome accession   NZ_OZ197093
Coordinates   1464196..1464765 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01465-3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459196..1469765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEA_RS07380 - 1459670..1460278 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUEA_RS07385 rplL 1460453..1460821 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUEA_RS07390 rplJ 1460864..1461364 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUEA_RS07395 rplA 1461636..1462328 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUEA_RS07400 rplK 1462536..1462958 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUEA_RS07405 nusG 1463139..1463687 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUEA_RS07410 secE 1463700..1463882 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUEA_RS07415 rpmG 1463938..1464081 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUEA_RS07420 sigH 1464196..1464765 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUEA_RS07425 - 1464846..1465370 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUEA_RS07430 rlmB 1465370..1466116 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUEA_RS07435 - 1466124..1466528 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUEA_RS07440 cysS 1466521..1467921 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUEA_RS07445 cysE 1467905..1468552 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169365 ACNUEA_RS07420 WP_000872866.1 1464196..1464765(-) (sigH) [Staphylococcus aureus isolate 23S01465-3]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169365 ACNUEA_RS07420 WP_000872866.1 1464196..1464765(-) (sigH) [Staphylococcus aureus isolate 23S01465-3]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment