Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUEA_RS04390 Genome accession   NZ_OZ197093
Coordinates   865547..866233 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01465-3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860547..871233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEA_RS04370 rpsT 861461..861712 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACNUEA_RS04375 holA 861757..862731 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUEA_RS04380 comEC 862788..864989 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUEA_RS04385 - 864994..865455 (-) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUEA_RS04390 comEA 865547..866233 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUEA_RS04395 - 866273..866989 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUEA_RS04400 rsfS 866992..867345 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNUEA_RS04405 yqeK 867346..867930 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUEA_RS04410 nadD 867920..868489 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUEA_RS04415 yhbY 868492..868782 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUEA_RS04420 aroE 868786..869592 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUEA_RS04425 yqeH 869606..870706 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169355 ACNUEA_RS04390 WP_001825349.1 865547..866233(-) (comEA) [Staphylococcus aureus isolate 23S01465-3]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169355 ACNUEA_RS04390 WP_001825349.1 865547..866233(-) (comEA) [Staphylococcus aureus isolate 23S01465-3]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment