Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUDV_RS06195 Genome accession   NZ_OZ197092
Coordinates   1255846..1256241 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00050-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1250846..1261241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDV_RS06170 thiE 1251445..1252086 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUDV_RS06175 thiM 1252088..1252879 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUDV_RS06180 thiD 1252863..1253693 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUDV_RS06185 tenA 1253686..1254375 (-) 690 WP_000396068.1 thiaminase II -
  ACNUDV_RS06190 sceD 1254762..1255457 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUDV_RS06195 ssb 1255846..1256241 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUDV_RS06200 - 1256435..1256875 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUDV_RS06205 fabZ 1256934..1257374 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUDV_RS06210 murA 1257408..1258673 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUDV_RS06215 - 1258784..1259017 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUDV_RS06220 - 1259149..1259241 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUDV_RS06225 - 1259671..1260075 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169324 ACNUDV_RS06195 WP_000932694.1 1255846..1256241(-) (ssb) [Staphylococcus aureus isolate 23S00050-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169324 ACNUDV_RS06195 WP_000932694.1 1255846..1256241(-) (ssb) [Staphylococcus aureus isolate 23S00050-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment