Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUDV_RS03765 Genome accession   NZ_OZ197092
Coordinates   787863..788549 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00050-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 782863..793549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDV_RS03745 - 783009..783956 (-) 948 WP_000121214.1 IS30-like element ISSau1 family transposase -
  ACNUDV_RS03750 holA 784073..785047 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUDV_RS03755 comEC 785104..787305 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUDV_RS03760 - 787310..787771 (-) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUDV_RS03765 comEA 787863..788549 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUDV_RS03770 - 788589..789305 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUDV_RS03775 rsfS 789308..789661 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNUDV_RS03780 yqeK 789662..790246 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUDV_RS03785 nadD 790236..790805 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUDV_RS03790 yhbY 790808..791098 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUDV_RS03795 aroE 791102..791908 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUDV_RS03800 yqeH 791922..793022 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169313 ACNUDV_RS03765 WP_001825349.1 787863..788549(-) (comEA) [Staphylococcus aureus isolate 23S00050-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169313 ACNUDV_RS03765 WP_001825349.1 787863..788549(-) (comEA) [Staphylococcus aureus isolate 23S00050-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment