Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUD4_RS13620 Genome accession   NZ_OZ197090
Coordinates   2681539..2682225 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01467-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2676539..2687225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD4_RS13600 rpsT 2677453..2677704 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACNUD4_RS13605 holA 2677749..2678723 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUD4_RS13610 comEC 2678780..2680981 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUD4_RS13615 - 2680986..2681447 (-) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUD4_RS13620 comEA 2681539..2682225 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUD4_RS13625 - 2682265..2682981 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUD4_RS13630 rsfS 2682984..2683337 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNUD4_RS13635 yqeK 2683338..2683922 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUD4_RS13640 nadD 2683912..2684481 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUD4_RS13645 yhbY 2684484..2684774 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUD4_RS13650 aroE 2684778..2685584 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUD4_RS13655 yqeH 2685598..2686698 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169245 ACNUD4_RS13620 WP_001825349.1 2681539..2682225(-) (comEA) [Staphylococcus aureus isolate 23S01467-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169245 ACNUD4_RS13620 WP_001825349.1 2681539..2682225(-) (comEA) [Staphylococcus aureus isolate 23S01467-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment