Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUD4_RS08100 Genome accession   NZ_OZ197090
Coordinates   1611202..1611597 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01467-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1606202..1616597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD4_RS08070 - 1607368..1607772 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUD4_RS08075 - 1608202..1608294 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUD4_RS08080 - 1608426..1608659 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUD4_RS08085 murA 1608770..1610035 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUD4_RS08090 fabZ 1610069..1610509 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUD4_RS08095 - 1610568..1611008 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUD4_RS08100 ssb 1611202..1611597 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUD4_RS08105 sceD 1611986..1612681 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUD4_RS08110 tenA 1613068..1613757 (+) 690 WP_000396068.1 thiaminase II -
  ACNUD4_RS08115 thiD 1613750..1614580 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUD4_RS08120 thiM 1614564..1615355 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUD4_RS08125 thiE 1615357..1615998 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169225 ACNUD4_RS08100 WP_000932694.1 1611202..1611597(+) (ssb) [Staphylococcus aureus isolate 23S01467-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169225 ACNUD4_RS08100 WP_000932694.1 1611202..1611597(+) (ssb) [Staphylococcus aureus isolate 23S01467-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment