Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUD4_RS01855 Genome accession   NZ_OZ197090
Coordinates   352416..352985 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01467-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 347416..357985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD4_RS01815 - 347890..348498 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUD4_RS01820 rplL 348673..349041 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUD4_RS01825 rplJ 349084..349584 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUD4_RS01830 rplA 349856..350548 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUD4_RS01835 rplK 350756..351178 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUD4_RS01840 nusG 351359..351907 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUD4_RS01845 secE 351920..352102 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUD4_RS01850 rpmG 352158..352301 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUD4_RS01855 sigH 352416..352985 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUD4_RS01860 - 353066..353590 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUD4_RS01865 rlmB 353590..354336 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUD4_RS01870 - 354344..354748 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUD4_RS01875 cysS 354741..356141 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUD4_RS01880 cysE 356125..356772 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169213 ACNUD4_RS01855 WP_000872866.1 352416..352985(-) (sigH) [Staphylococcus aureus isolate 23S01467-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169213 ACNUD4_RS01855 WP_000872866.1 352416..352985(-) (sigH) [Staphylococcus aureus isolate 23S01467-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment