Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUEB_RS14470 Genome accession   NZ_OZ197089
Coordinates   2861551..2861946 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00080-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2856551..2866946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEB_RS14440 - 2857717..2858121 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUEB_RS14445 - 2858551..2858643 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUEB_RS14450 - 2858775..2859008 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUEB_RS14455 murA 2859119..2860384 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUEB_RS14460 fabZ 2860418..2860858 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUEB_RS14465 - 2860917..2861357 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUEB_RS14470 ssb 2861551..2861946 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUEB_RS14475 sceD 2862335..2863030 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUEB_RS14480 tenA 2863417..2864106 (+) 690 WP_000396068.1 thiaminase II -
  ACNUEB_RS14485 thiD 2864099..2864929 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUEB_RS14490 thiM 2864913..2865704 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUEB_RS14495 thiE 2865706..2866347 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169208 ACNUEB_RS14470 WP_000932694.1 2861551..2861946(+) (ssb) [Staphylococcus aureus isolate 23S00080-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169208 ACNUEB_RS14470 WP_000932694.1 2861551..2861946(+) (ssb) [Staphylococcus aureus isolate 23S00080-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment