Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUEB_RS08145 Genome accession   NZ_OZ197089
Coordinates   1586234..1586803 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00080-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581234..1591803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEB_RS08105 - 1581708..1582316 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUEB_RS08110 rplL 1582491..1582859 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUEB_RS08115 rplJ 1582902..1583402 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUEB_RS08120 rplA 1583674..1584366 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUEB_RS08125 rplK 1584574..1584996 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUEB_RS08130 nusG 1585177..1585725 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUEB_RS08135 secE 1585738..1585920 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUEB_RS08140 rpmG 1585976..1586119 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUEB_RS08145 sigH 1586234..1586803 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUEB_RS08150 - 1586884..1587408 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUEB_RS08155 rlmB 1587408..1588154 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUEB_RS08160 - 1588162..1588566 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUEB_RS08165 cysS 1588559..1589959 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUEB_RS08170 cysE 1589943..1590590 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169196 ACNUEB_RS08145 WP_000872866.1 1586234..1586803(-) (sigH) [Staphylococcus aureus isolate 23S00080-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169196 ACNUEB_RS08145 WP_000872866.1 1586234..1586803(-) (sigH) [Staphylococcus aureus isolate 23S00080-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment