Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUD7_RS12825 Genome accession   NZ_OZ197088
Coordinates   2584384..2584779 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01947-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2579384..2589779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD7_RS12795 - 2580550..2580954 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUD7_RS12800 - 2581384..2581476 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUD7_RS12805 - 2581608..2581841 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUD7_RS12810 murA 2581952..2583217 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUD7_RS12815 fabZ 2583251..2583691 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUD7_RS12820 - 2583750..2584190 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUD7_RS12825 ssb 2584384..2584779 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUD7_RS12830 sceD 2585168..2585863 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUD7_RS12835 tenA 2586250..2586939 (+) 690 WP_000396068.1 thiaminase II -
  ACNUD7_RS12840 thiD 2586932..2587762 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUD7_RS12845 thiM 2587746..2588537 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUD7_RS12850 thiE 2588539..2589180 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169164 ACNUD7_RS12825 WP_000932694.1 2584384..2584779(+) (ssb) [Staphylococcus aureus isolate 23S01947-3]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169164 ACNUD7_RS12825 WP_000932694.1 2584384..2584779(+) (ssb) [Staphylococcus aureus isolate 23S01947-3]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment