Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUD7_RS06580 Genome accession   NZ_OZ197088
Coordinates   1325600..1326169 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01947-3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320600..1331169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD7_RS06540 - 1321074..1321682 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUD7_RS06545 rplL 1321857..1322225 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUD7_RS06550 rplJ 1322268..1322768 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUD7_RS06555 rplA 1323040..1323732 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUD7_RS06560 rplK 1323940..1324362 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUD7_RS06565 nusG 1324543..1325091 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUD7_RS06570 secE 1325104..1325286 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUD7_RS06575 rpmG 1325342..1325485 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUD7_RS06580 sigH 1325600..1326169 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUD7_RS06585 - 1326250..1326774 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUD7_RS06590 rlmB 1326774..1327520 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUD7_RS06595 - 1327528..1327932 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUD7_RS06600 cysS 1327925..1329325 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUD7_RS06605 cysE 1329309..1329956 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169152 ACNUD7_RS06580 WP_000872866.1 1325600..1326169(-) (sigH) [Staphylococcus aureus isolate 23S01947-3]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169152 ACNUD7_RS06580 WP_000872866.1 1325600..1326169(-) (sigH) [Staphylococcus aureus isolate 23S01947-3]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment