Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUD7_RS03550 Genome accession   NZ_OZ197088
Coordinates   726950..727636 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01947-3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721950..732636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD7_RS03530 rpsT 722864..723115 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACNUD7_RS03535 holA 723160..724134 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUD7_RS03540 comEC 724191..726392 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUD7_RS03545 - 726397..726858 (-) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUD7_RS03550 comEA 726950..727636 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUD7_RS03555 - 727676..728392 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUD7_RS03560 rsfS 728395..728748 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNUD7_RS03565 yqeK 728749..729333 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUD7_RS03570 nadD 729323..729892 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUD7_RS03575 yhbY 729895..730185 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUD7_RS03580 aroE 730189..730995 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUD7_RS03585 yqeH 731009..732109 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169142 ACNUD7_RS03550 WP_001825349.1 726950..727636(-) (comEA) [Staphylococcus aureus isolate 23S01947-3]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169142 ACNUD7_RS03550 WP_001825349.1 726950..727636(-) (comEA) [Staphylococcus aureus isolate 23S01947-3]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment