Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUEF_RS13505 Genome accession   NZ_OZ197087
Coordinates   2672117..2672803 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00037-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2667117..2677803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEF_RS13485 rpsT 2668031..2668282 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACNUEF_RS13490 holA 2668327..2669301 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUEF_RS13495 comEC 2669358..2671559 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUEF_RS13500 - 2671564..2672025 (-) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUEF_RS13505 comEA 2672117..2672803 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUEF_RS13510 - 2672843..2673559 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUEF_RS13515 rsfS 2673562..2673915 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNUEF_RS13520 yqeK 2673916..2674500 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUEF_RS13525 nadD 2674490..2675059 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUEF_RS13530 yhbY 2675062..2675352 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUEF_RS13535 aroE 2675356..2676162 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUEF_RS13540 yqeH 2676176..2677276 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169120 ACNUEF_RS13505 WP_001825349.1 2672117..2672803(-) (comEA) [Staphylococcus aureus isolate 23S00037-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169120 ACNUEF_RS13505 WP_001825349.1 2672117..2672803(-) (comEA) [Staphylococcus aureus isolate 23S00037-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment