Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUEF_RS07700 Genome accession   NZ_OZ197087
Coordinates   1510280..1510849 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00037-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505280..1515849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEF_RS07675 cysE 1506493..1507140 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNUEF_RS07680 cysS 1507124..1508524 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUEF_RS07685 - 1508517..1508921 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUEF_RS07690 rlmB 1508929..1509675 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUEF_RS07695 - 1509675..1510199 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUEF_RS07700 sigH 1510280..1510849 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUEF_RS07705 rpmG 1510964..1511107 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUEF_RS07710 secE 1511163..1511345 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUEF_RS07715 nusG 1511358..1511906 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUEF_RS07720 rplK 1512087..1512509 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUEF_RS07725 rplA 1512717..1513409 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUEF_RS07730 rplJ 1513681..1514181 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUEF_RS07735 rplL 1514224..1514592 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUEF_RS07740 - 1514767..1515375 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169102 ACNUEF_RS07700 WP_000872866.1 1510280..1510849(+) (sigH) [Staphylococcus aureus isolate 23S00037-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169102 ACNUEF_RS07700 WP_000872866.1 1510280..1510849(+) (sigH) [Staphylococcus aureus isolate 23S00037-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment