Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUEF_RS01380 Genome accession   NZ_OZ197087
Coordinates   236181..236576 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00037-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 231181..241576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEF_RS01355 thiE 231780..232421 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUEF_RS01360 thiM 232423..233214 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUEF_RS01365 thiD 233198..234028 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUEF_RS01370 tenA 234021..234710 (-) 690 WP_000396068.1 thiaminase II -
  ACNUEF_RS01375 sceD 235097..235792 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUEF_RS01380 ssb 236181..236576 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUEF_RS01385 - 236770..237210 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUEF_RS01390 fabZ 237269..237709 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUEF_RS01395 murA 237743..239008 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUEF_RS01400 - 239119..239352 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUEF_RS01405 - 239484..239576 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUEF_RS01410 - 240006..240410 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169090 ACNUEF_RS01380 WP_000932694.1 236181..236576(-) (ssb) [Staphylococcus aureus isolate 23S00037-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169090 ACNUEF_RS01380 WP_000932694.1 236181..236576(-) (ssb) [Staphylococcus aureus isolate 23S00037-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment