Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUDR_RS14210 Genome accession   NZ_OZ197086
Coordinates   2837447..2837842 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01549-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2832447..2842842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDR_RS14180 - 2833613..2834017 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUDR_RS14185 - 2834447..2834539 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUDR_RS14190 - 2834671..2834904 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUDR_RS14195 murA 2835015..2836280 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUDR_RS14200 fabZ 2836314..2836754 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUDR_RS14205 - 2836813..2837253 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUDR_RS14210 ssb 2837447..2837842 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUDR_RS14215 sceD 2838231..2838926 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUDR_RS14220 tenA 2839313..2840002 (+) 690 WP_000396068.1 thiaminase II -
  ACNUDR_RS14225 thiD 2839995..2840825 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUDR_RS14230 thiM 2840809..2841600 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUDR_RS14235 thiE 2841602..2842243 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169085 ACNUDR_RS14210 WP_000932694.1 2837447..2837842(+) (ssb) [Staphylococcus aureus isolate 23S01549-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169085 ACNUDR_RS14210 WP_000932694.1 2837447..2837842(+) (ssb) [Staphylococcus aureus isolate 23S01549-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment