Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUDR_RS08020 Genome accession   NZ_OZ197086
Coordinates   1586979..1587548 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01549-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581979..1592548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDR_RS07980 - 1582453..1583061 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUDR_RS07985 rplL 1583236..1583604 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUDR_RS07990 rplJ 1583647..1584147 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUDR_RS07995 rplA 1584419..1585111 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUDR_RS08000 rplK 1585319..1585741 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUDR_RS08005 nusG 1585922..1586470 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUDR_RS08010 secE 1586483..1586665 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUDR_RS08015 rpmG 1586721..1586864 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUDR_RS08020 sigH 1586979..1587548 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUDR_RS08025 - 1587629..1588153 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUDR_RS08030 rlmB 1588153..1588899 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUDR_RS08035 - 1588907..1589311 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUDR_RS08040 cysS 1589304..1590704 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUDR_RS08045 cysE 1590688..1591335 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169073 ACNUDR_RS08020 WP_000872866.1 1586979..1587548(-) (sigH) [Staphylococcus aureus isolate 23S01549-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169073 ACNUDR_RS08020 WP_000872866.1 1586979..1587548(-) (sigH) [Staphylococcus aureus isolate 23S01549-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment