Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUDR_RS02535 Genome accession   NZ_OZ197086
Coordinates   468346..469032 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01549-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 463346..474032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDR_RS02500 yqeH 463873..464973 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUDR_RS02505 aroE 464987..465793 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUDR_RS02510 yhbY 465797..466087 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUDR_RS02515 nadD 466090..466659 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUDR_RS02520 yqeK 466649..467233 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUDR_RS02525 rsfS 467234..467587 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUDR_RS02530 - 467590..468306 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUDR_RS02535 comEA 468346..469032 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUDR_RS02540 - 469124..469585 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUDR_RS02545 comEC 469590..471791 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUDR_RS02550 holA 471848..472822 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUDR_RS02555 rpsT 472867..473118 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169050 ACNUDR_RS02535 WP_001825349.1 468346..469032(+) (comEA) [Staphylococcus aureus isolate 23S01549-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169050 ACNUDR_RS02535 WP_001825349.1 468346..469032(+) (comEA) [Staphylococcus aureus isolate 23S01549-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment