Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUDZ_RS09950 Genome accession   NZ_OZ197085
Coordinates   1924703..1925098 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01974-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1919703..1930098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDZ_RS09925 thiE 1920302..1920943 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUDZ_RS09930 thiM 1920945..1921736 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUDZ_RS09935 thiD 1921720..1922550 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUDZ_RS09940 tenA 1922543..1923232 (-) 690 WP_000396068.1 thiaminase II -
  ACNUDZ_RS09945 sceD 1923619..1924314 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUDZ_RS09950 ssb 1924703..1925098 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUDZ_RS09955 - 1925292..1925732 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUDZ_RS09960 fabZ 1925791..1926231 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUDZ_RS09965 murA 1926265..1927530 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUDZ_RS09970 - 1927641..1927874 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUDZ_RS09975 - 1928006..1928098 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUDZ_RS09980 - 1928528..1928932 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1169031 ACNUDZ_RS09950 WP_000932694.1 1924703..1925098(-) (ssb) [Staphylococcus aureus isolate 23S01974-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169031 ACNUDZ_RS09950 WP_000932694.1 1924703..1925098(-) (ssb) [Staphylococcus aureus isolate 23S01974-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment