Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUDZ_RS04435 Genome accession   NZ_OZ197085
Coordinates   854083..854769 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01974-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 849083..859769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDZ_RS04400 yqeH 849610..850710 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUDZ_RS04405 aroE 850724..851530 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUDZ_RS04410 yhbY 851534..851824 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUDZ_RS04415 nadD 851827..852396 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUDZ_RS04420 yqeK 852386..852970 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUDZ_RS04425 rsfS 852971..853324 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUDZ_RS04430 - 853327..854043 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUDZ_RS04435 comEA 854083..854769 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUDZ_RS04440 - 854861..855322 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUDZ_RS04445 comEC 855327..857528 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUDZ_RS04450 holA 857585..858559 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUDZ_RS04455 rpsT 858604..858855 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169011 ACNUDZ_RS04435 WP_001825349.1 854083..854769(+) (comEA) [Staphylococcus aureus isolate 23S01974-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169011 ACNUDZ_RS04435 WP_001825349.1 854083..854769(+) (comEA) [Staphylococcus aureus isolate 23S01974-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment