Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUDZ_RS01415 Genome accession   NZ_OZ197085
Coordinates   255558..256127 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01974-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 250558..261127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDZ_RS01390 cysE 251771..252418 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNUDZ_RS01395 cysS 252402..253802 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUDZ_RS01400 - 253795..254199 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUDZ_RS01405 rlmB 254207..254953 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUDZ_RS01410 - 254953..255477 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUDZ_RS01415 sigH 255558..256127 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUDZ_RS01420 rpmG 256242..256385 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUDZ_RS01425 secE 256441..256623 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUDZ_RS01430 nusG 256636..257184 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUDZ_RS01435 rplK 257365..257787 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUDZ_RS01440 rplA 257995..258687 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUDZ_RS01445 rplJ 258959..259459 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUDZ_RS01450 rplL 259502..259870 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUDZ_RS01455 - 260045..260653 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1169001 ACNUDZ_RS01415 WP_000872866.1 255558..256127(+) (sigH) [Staphylococcus aureus isolate 23S01974-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1169001 ACNUDZ_RS01415 WP_000872866.1 255558..256127(+) (sigH) [Staphylococcus aureus isolate 23S01974-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment