Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUDX_RS09825 Genome accession   NZ_OZ197084
Coordinates   1965611..1966297 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01952-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1960611..1971297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDX_RS09790 yqeH 1961138..1962238 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUDX_RS09795 aroE 1962252..1963058 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUDX_RS09800 yhbY 1963062..1963352 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUDX_RS09805 nadD 1963355..1963924 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUDX_RS09810 yqeK 1963914..1964498 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUDX_RS09815 rsfS 1964499..1964852 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUDX_RS09820 - 1964855..1965571 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUDX_RS09825 comEA 1965611..1966297 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUDX_RS09830 - 1966389..1966850 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUDX_RS09835 comEC 1966855..1969056 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUDX_RS09840 holA 1969113..1970087 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUDX_RS09845 rpsT 1970132..1970383 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1168979 ACNUDX_RS09825 WP_001825349.1 1965611..1966297(+) (comEA) [Staphylococcus aureus isolate 23S01952-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1168979 ACNUDX_RS09825 WP_001825349.1 1965611..1966297(+) (comEA) [Staphylococcus aureus isolate 23S01952-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment