Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUDX_RS06790 Genome accession   NZ_OZ197084
Coordinates   1367088..1367657 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01952-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362088..1372657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDX_RS06765 cysE 1363301..1363948 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNUDX_RS06770 cysS 1363932..1365332 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUDX_RS06775 - 1365325..1365729 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUDX_RS06780 rlmB 1365737..1366483 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUDX_RS06785 - 1366483..1367007 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUDX_RS06790 sigH 1367088..1367657 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUDX_RS06795 rpmG 1367772..1367915 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUDX_RS06800 secE 1367971..1368153 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUDX_RS06805 nusG 1368166..1368714 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUDX_RS06810 rplK 1368895..1369317 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUDX_RS06815 rplA 1369525..1370217 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUDX_RS06820 rplJ 1370489..1370989 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUDX_RS06825 rplL 1371032..1371400 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUDX_RS06830 - 1371575..1372183 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1168969 ACNUDX_RS06790 WP_000872866.1 1367088..1367657(+) (sigH) [Staphylococcus aureus isolate 23S01952-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1168969 ACNUDX_RS06790 WP_000872866.1 1367088..1367657(+) (sigH) [Staphylococcus aureus isolate 23S01952-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment