Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUDX_RS00530 Genome accession   NZ_OZ197084
Coordinates   108451..108846 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01952-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 103451..113846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDX_RS00505 thiE 104050..104691 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUDX_RS00510 thiM 104693..105484 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUDX_RS00515 thiD 105468..106298 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUDX_RS00520 tenA 106291..106980 (-) 690 WP_000396068.1 thiaminase II -
  ACNUDX_RS00525 sceD 107367..108062 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUDX_RS00530 ssb 108451..108846 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUDX_RS00535 - 109040..109480 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUDX_RS00540 fabZ 109539..109979 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUDX_RS00545 murA 110013..111278 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUDX_RS00550 - 111389..111622 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUDX_RS00555 - 111754..111846 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUDX_RS00560 - 112276..112680 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1168957 ACNUDX_RS00530 WP_000932694.1 108451..108846(-) (ssb) [Staphylococcus aureus isolate 23S01952-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1168957 ACNUDX_RS00530 WP_000932694.1 108451..108846(-) (ssb) [Staphylococcus aureus isolate 23S01952-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment