Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUEC_RS08105 Genome accession   NZ_OZ197083
Coordinates   1611194..1611589 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01949-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1606194..1616589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEC_RS08075 - 1607360..1607764 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUEC_RS08080 - 1608194..1608286 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUEC_RS08085 - 1608418..1608651 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUEC_RS08090 murA 1608762..1610027 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUEC_RS08095 fabZ 1610061..1610501 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUEC_RS08100 - 1610560..1611000 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUEC_RS08105 ssb 1611194..1611589 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUEC_RS08110 sceD 1611978..1612673 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUEC_RS08115 tenA 1613060..1613749 (+) 690 WP_000396068.1 thiaminase II -
  ACNUEC_RS08120 thiD 1613742..1614572 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUEC_RS08125 thiM 1614556..1615347 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUEC_RS08130 thiE 1615349..1615990 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1168929 ACNUEC_RS08105 WP_000932694.1 1611194..1611589(+) (ssb) [Staphylococcus aureus isolate 23S01949-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1168929 ACNUEC_RS08105 WP_000932694.1 1611194..1611589(+) (ssb) [Staphylococcus aureus isolate 23S01949-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment